31. Complex network-based cough signal analysis for digital auscultation: a machine learning approachMohanachandran Nair Sindhu Swapna, 2022, original scientific article Abstract: The paper proposes a novel approach to bring out the potential of complex networks based on graph theory to unwrap the hidden characteristics of cough signals, croup (BC), and pertussis (PS). The spectral and complex network analyses of 48 cough sounds are utilized for understanding the airflow through the infected respiratory tract. Among the different phases of the cough sound time-domain signals of BC and PS – expulsive (X), intermediate (I), and voiced (V) - the phase ‘I’ is noisy in BC due to improper glottal functioning. The spectral analyses reveal high-frequency components in both cough signals with an additional high-intense low-frequency spread in BC. The complex network features created by the correlation mapping approach, like number of edges (E), graph density (G), transitivity (), degree centrality (D), average path length (L), and number of components () distinguishes BC and PS. The higher values of E, G, and for BC indicate its musical nature through the strong correlation between the signal segments and the presence of high-intense low-frequency components in BC, unlike that in PS. The values of D, L, and discriminate BC and PS in terms of the strength of the correlation between the nodes within them. The linear discriminant analysis (LDA) and quadratic support vector machine (QSVM) classifies BC and PS, with greater accuracy of 94.11% for LDA. The proposed work opens up the potentiality of employing complex networks for cough sound analysis, which is vital in the current scenario of COVID-19. Keywords: Complex network analysis, Auscultation, Croup cough, Pertussis
Spectral analysis, Machine learning techniques Published in RUNG: 30.06.2022; Views: 2565; Downloads: 0 This document has many files! More... |
32. Time series and fractal analyses of wheezing : a novel approachMohanachandran Nair Sindhu Swapna, Ammini Renjini, Vimal Raj, S. Sreejyothi, Sankaranarayana Iyer Sankararaman, 2020, original scientific article Abstract: Since the outbreak of the pandemic Coronavirus Disease 2019, the world is in search of novel non-invasive methods for safer
and early detection of lung diseases. The pulmonary pathological symptoms refected through the lung sound opens a possibility of detection through auscultation and of employing spectral, fractal, nonlinear time series and principal component
analyses. Thirty-fve signals of vesicular and expiratory wheezing breath sound, subjected to spectral analyses shows a clear
distinction in terms of time duration, intensity, and the number of frequency components. An investigation of the dynamics
of air molecules during respiration using phase portrait, Lyapunov exponent, sample entropy, fractal dimension, and Hurst
exponent helps in understanding the degree of complexity arising due to the presence of mucus secretions and constrictions
in the respiratory airways. The feature extraction of the power spectral density data and the application of principal component analysis helps in distinguishing vesicular and expiratory wheezing and thereby, giving a ray of hope in accomplishing
an early detection of pulmonary diseases through sound signal analysis. Keywords: auscultation, wheeze, fractals, nonlinear time series analysis, sample entropy Published in RUNG: 30.06.2022; Views: 2108; Downloads: 0 This document has many files! More... |
33. Nonlinear time series and principal component analyses: Potential diagnostic tools for COVID-19 auscultationMohanachandran Nair Sindhu Swapna, RAJ VIMAL, RENJINI A, SREEJYOTHI S, SANKARARMAN S, 2020, original scientific article Abstract: The development of novel digital auscultation techniques has become highly significant in the context
of the outburst of the pandemic COVID 19. The present work reports the spectral, nonlinear time series,
fractal, and complexity analysis of vesicular (VB) and bronchial (BB) breath signals. The analysis is carried
out with 37 breath sound signals. The spectral analysis brings out the signatures of VB and BB through
the power spectral density plot and wavelet scalogram. The dynamics of airflow through the respiratory tract during VB and BB are investigated using the nonlinear time series and complexity analyses in
terms of the phase portrait, fractal dimension, Hurst exponent, and sample entropy. The higher degree
of chaoticity in BB relative to VB is unwrapped through the maximal Lyapunov exponent. The principal
component analysis helps in classifying VB and BB sound signals through the feature extraction from the
power spectral density data. The method proposed in the present work is simple, cost-effective, and sensitive, with a far-reaching potential of addressing and diagnosing the current issue of COVID 19 through
lung auscultation. Keywords: Breath sound analysis, Fractal dimension, Nonlinear time series analysis, Sample entropy, Hurst exponent, Principal component analysis Published in RUNG: 28.06.2022; Views: 2435; Downloads: 0 This document has many files! More... |
34. Unravelling the potential of phase portrait in the auscultation of mitral valve dysfunctionMohanachandran Nair Sindhu Swapna, SREEJYOTHI S, RENJINI A, RAJ VIMAL, SANKARARAMAN SANKARANARAYANA IYER, 2021, original scientific article Abstract: The manuscript elucidates the potential of phase portrait, fast Fourier transform, wavelet, and time-series analyses of the heart murmur (HM) of normal (healthy) and mitral regurgitation (MR) in the diagnosis of valve-related cardiovascular diseases. The temporal evolution study of phase portrait and the entropy analyses of HM unveil the valve dysfunctioninduced haemodynamics. A tenfold increase in sample entropy in MR from that of normal indicates the valve dysfunction. The occurrence of a large number of frequency components between lub and dub in MR, compared to the normal, is substantiated through the spectral analyses. The machine learning techniques, K-nearest neighbour, support vector machine, and principal component analyses give 100% predictive accuracy. Thus, the study suggests a surrogate method of auscultation of HM that can be employed cost-effectively in rural health centres. Keywords: phase portrait, auscultation, mitral valve dysfunction, heart murmur, nonlinear time series analysis Published in RUNG: 28.06.2022; Views: 2138; Downloads: 0 This document has many files! More... |
35. Characterization of a karst aquifer in the recharge area of Malenščica and Unica springs based on spatial and temporal variations of natural tracersBlaž Kogovšek, 2022, doctoral dissertation Abstract: The aim of the present study is to characterize and improve the still insufficient knowledge of the recharge processes that have an important influence on the flow and solute transport in karst aquifers and thus also on the quantity and quality of karst water sources. A binary karst aquifer in the recharge area of the Malenščica and Unica springs, which covers an area of about 820 km2 in SW Slovenia, was selected as the study area.
A dense monitoring network was established at 20 observation points (six springs, four ponors, seven water-active caves and three surface streams) for simultaneous monitoring of the hydrological characteristics and the physicochemical properties of the water, the so-called natural tracers. Data-loggers were installed to measure water pressure, temperature and conductivity. During selected storm events, samples were taken for chemical and microbiological analyses and discharge measurements were made. The meteorological and hydrological data of the Slovenian Environment Agency complemented the extensive dataset.
Collected data allowed the analysis and comparison of the spatial and temporal variations of the natural tracers under different hydrological conditions. Frequent discharge measurements allowed the generation of rating curves and proved to be a crucial element for understanding the hydraulic processes that determine the functioning of this system. The calculation of the water budget allowed an assessment of the proportion of autogenic and allogenic recharge of the springs and a quantitative estimate of autogenic recharge under different hydrological conditions.
The hydrological analysis, i.e. the flow duration curve, the hydrograph separation techniques and the recession analysis, revealed that the Malenščica spring has a higher storage capacity, a greater proportion of autogenic recharge, especially at low-flow, and a slower recession than the Unica spring. This was also confirmed by correlation and spectral analyses, which were also used to investigate the relationships between discharges at ponors and springs. However, the results of the cross-correlation analysis showed hardly any difference between the two springs and in this case proved to be unsuitable for studying the influence of allogenic recharge. Instead, partial cross-correlation analysis was used to control the input parameters of effective precipitation and discharge of one of the sinking streams to determine the contribution of the other sinking stream to the observed spring. The results confirmed differences in allogenic recharge of the Unica and Malenščica springs.
Hysteresis analysis has been applied as a complementary method to time series analysis and represents an improved approach to the characterization of the karst hydrological system. The hydraulic approach to the construction of hysteresis enabled a detailed analysis of allogenic and autogenic water interaction and its influence on the Malenščica and Unica springs under different hydrological conditions. Narrow shapes of the hysteresis indicate a direct hydraulic connection between the ponor and the spring and thus a well-developed drainage system. Any deviation towards a convex or concave shape indicates a less developed, more matrix-related drainage system or the influence of other recharge sources. Analysis of physicochemical hysteretic function of individual locations confirmed the differences in the recharge characteristics of the two springs. Compared to the Unica spring, the Malenščica spring has specific recharge characteristics that result in lower vulnerability to the effects of the sinking streams. A greater proportion of autogenic recharge in the initial phase of the storm event is important, as it allows for a time delay of the possible negative effects of the sinking stream. However, possible pollution from the area of autogenic recharge can have strong negative effects, as in this initial phase with low discharges the dilution effect is negligible. Keywords: karst aquifer, dynamics of natural tracers, storm events, discharge measurements, time series analysis, hysteresis, Unica spring, Malenščica spring Published in RUNG: 01.03.2022; Views: 3218; Downloads: 122 Full text (18,38 MB) |
36. Identification of point sources in gamma rays using U-shaped convolutional neural networks and a data challengeBoris Panes, Christopher Eckner, Luc Hendriks, Sascha Caron, Klaas Dijkstra, Gudlaugur Johannesson, Roberto Ruiz de Austri, Gabrijela Zaharijas, 2021, original scientific article Keywords: gamma rays, astroparticle physics, data analysis Published in RUNG: 17.02.2022; Views: 2774; Downloads: 8 Link to full text This document has many files! More... |
37. Spectroscopic investigation of oxygen vacancies in CeO[sub]2 : dissertationThanveer Thajudheen, 2021, doctoral dissertation Abstract: A unique material, ceria (CeO2), which is widely applied in automobile exhaust catalysts, is functional due to presence of defects in its crystal structure. Furthermore, the structural defects dictate electrical and chemical properties of ceria. The creation of intrinsic oxygen vacancies in ceria is responsible for oxygen-ion conductivity in solid oxide fuel cells. This unfolds the keen interest in ceria defects. Using the analytical technique cathodoluminescence spectroscopy (CLS) we can characterize ceria for its band gap and the defect states within the band gap. Since CLS has a high spatial resolution, high sensitivity to low concentration of defects and ability to obtain depth resolved information it is an obvious technique of choice.
The first part of the thesis is an introduction to the topic and description of the experimental techniques. Importance of ceria as a multifaceted material finding applications in areas spanning from energy production and conversion to biomedical applications is detailed. CLS as a tool to understand defect-related optical properties and advancement in the CL detection systems are discussed. To study the relationship between local structure and its impact on CL emission spectra, an X-ray absorption spectroscopy techniques were used. The X-ray absorption near edge structure (XANES) and the Extended x-ray absorption fine structure (EXAFS) techniques are summarized.
The second part discusses CL emission from ceria. Initially, CL emission from reduced ceria and its dependence on oxygen vacancy concentration are presented. The origin of emission was attributed to different configurations of the oxygen vacancies and polarons. The recent F center description in ceria was adopted here. The intriguing observation of CL emission quenching as a function of oxygen vacancy concentration was explained on the basis of a relative change in population of F centers in ceria. This demonstrated the relevance of local structure for the CL emission in ceria. In order to have a better understanding of the system, La-doped ceria was proposed as a model system. A precise control over the stoichiometry helped to achieve a desired oxygen vacancy concentration. The CL emission behavior, as observed in reduced ceria, was replicated in the case of La-doped ceria and the analysis revealed that F+ centers favor CL emission whereas F0 centers are disadvantageous. The local structure investigation using EXAFS analysis of both cations Ce and La (K-Edge) showed distortion from the fluorite symmetry and corroborated the F center description of oxygen vacancies in ceria. Our results provide an experimental evidence for F center description involving oxygen vacancies and polarons. Keywords: ceria, cathodoluminescence spectroscopy, local structure distortion, EXAFS analysis, La doped ceria, luminescence quenching, F centers, dissertations Published in RUNG: 25.11.2021; Views: 3520; Downloads: 114 Link to full text This document has many files! More... |
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40. Application of machine learning techniques for cosmic ray event classification and implementation of a real-time ultra-high energy photon search with the surface detector of the Pierre Auger Observatory : dissertationLukas Zehrer, 2021, doctoral dissertation Abstract: Despite their discovery already more than a century ago, Cosmic Rays (CRs) still did not divulge all their properties yet. Theories about the origin of ultra-high energy (UHE, > 10^18 eV) CRs predict accompanying primary photons. The existence of UHE photons can be investigated with the world’s largest ground-based experiment for detection of CR-induced extensive air showers (EAS), the Pierre Auger Observatory, which offers an unprecedented exposure to rare UHE cosmic particles.
The discovery of photons in the UHE regime would open a new observational window to the Universe, improve our understanding of the origin of CRs, and potentially uncloak new physics beyond the standard model.
The novelty of the presented work is the development of a "real-time" photon candidate event stream to a global network of observatories, the Astrophysical Multimessenger Observatory Network (AMON). The stream classifies CR events observed by the Auger surface detector (SD) array as regards their probability to be photon nominees, by feeding to advanced machine learning (ML) methods observational air shower parameters of individual CR events combined in a multivariate analysis (MVA).
The described straightforward classification procedure further increases the Pierre Auger Observatory’s endeavour to contribute to the global effort of multi-messenger (MM) studies of the highest energy astrophysical phenomena, by supplying AMON partner observatories the possibility to follow-up detected UHE events, live or in their archival data. Keywords: astroparticle physics, ultra-high energy cosmic rays, ultra-high energy photons, extensive air showers, Pierre Auger Observatory, multi-messenger, AMON, machine learning, multivariate analysis, dissertations Published in RUNG: 27.10.2021; Views: 3884; Downloads: 197 Link to full text This document has many files! More... |