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11.
Polymer Nanoparticle Sizes from Dynamic Light Scattering and Size Exclusion Chromatography: The Case Study of Polysilanes.
Artem Badasyan, Andraž Mavrič, Irena Kralj Cigić, Tim Bencik, Matjaž Valant, 2018, original scientific article

Abstract: Dynamic Light Scattering (DLS) and Size Exclusion Chromatography (SEC) are among the most popular methods for determining polymer sizes in solution. Taking dendritic and network polysilanes as a group of least soluble polymer substances, we critically compare and discuss the difference between nanoparticle sizes, obtained by DLS and SEC. Polymer nanoparticles are typically in poor solution conditions below the theta point and are in globular conformation therefore. Determination of particle sizes in presence of attractive interactions is not a trivial task. The only possibility to measure aggregation-free, a true molecular size of polymer nanoparticles in such regime of solution, is to operate with the dilute solution of globules (below theta point and above the miscibility line). Basing on results of our polysilane measurements, we come to a conclusion that DLS provides more reliable results than SEC for the dilute solution of globules. General implications for the size measurements of polymer nanoparticles in solutions are discussed.
Keywords: Polymer Nanoparticle, Dynamic Light Scattering, Size Exclusion Chromatography, Polysilanes
Published in RUNG: 16.05.2018; Views: 4203; Downloads: 16
.pdf Full text (3,17 MB)

12.
NOVEL APPROACHES FOR THE DETERMINATION OF BIOGENIC AMINES IN FOOD SAMPLES
Mladen Franko, Mojca Žorž, Mitja Martelanc, Sara Budal, 2017, original scientific article

Abstract: In this work, new analytical approaches for determination of biogenic amines in wines were developed. For the first time, we studied the derivatization of BAs in wines with naphthalene- 2,3-dicarboxaldehyde (NDA) and with dabsyl chloride (DBS) and analysis of derivatized BAs by HPLC coupled to fluorescence (HPLC-NDA-FL) and thermal lens spectrometry (HPLC-DBS-TLS) detectors. The sensitivity of the two methods (LODs HPLC-NDA-FL in the range 27-73 μg/L; LODs HPLC-DBS-TLS in the range 3.4-11 μg/L) was higher than that of the official method for biogenic amines in wines, OIV-MA-AS315-18 (60-77 μg/L). For its best performances, the HPLC-DBS-TLS technique was applied to the analysis of putrescine, cadaverine, histamine and tyramine in two white wine samples. Additionally, exploiting the Berthelot reaction, the TLS fast screening of biogenic amines in wines, following the release of ammonia by transglutaminase, was also proposed. This approach allowed us to determine total biogenic amount content in concentrations below 0.1 mg/L, expressed as equivalents of histamine.
Keywords: biogenic amines, NDA, liquid chromatography, TLS, fluorescence, wine
Published in RUNG: 02.11.2017; Views: 4384; Downloads: 269
.pdf Full text (441,06 KB)

13.
RAPID UPLC-ESI-MS/MS BASED ASSAY FOR DISCOVERY OF UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE (MurD) LIGASE INHIBITORS
Vjekoslava Car, 2016, master's thesis

Abstract: A rapid, selective, robust and sensitive analytical assay method, operating in a short time frame with acceptable levels of precision, linear range and the accuracy necessary for successful Mur ligases inhibitors discovery, was developed. An LC-MS/MS analytical procedure was designed for the determination of a MurD ligase reaction product (UMAG). The special focus of this work was on UDP-N-acetylmuramyl-L-alanine:D-glutamate ligase (MurD) activity. The assay method is especially valuable as an orthogonal (secondary) assay for the primary high throughput fluorescent-based assay screening of potential Mur ligase inhibitors. The LC-MS/MS assay is fully compatible with the components from the primary fluorescent-based assay and enables the analysis of the same samples by both methodologies. The presented LC-MS/MS assay procedure is used for the evaluation of the false positive hits (molecules) from the primary, fluorescence based, high throughput screening assay experiments. This is important for the elimination of false positive hits from the prohibitively expensive and time-consuming investigation process. Method development describes the evaluation and optimization of the various stages of sample preparation, chromatographic separation, MS/MS determination and quantification. An enzyme reaction is performed in a 96-well plate. The quenched reaction mixture samples were spiked with an internal standard (phenacetin). The permeate was injected onto the U(H)PLC-MS/MS triple quadrupole system after sample ultrafiltration. Chromatographic separation was achieved on the ACQUITY UPLCTM HSS T3 column (100 x 2.1 mm i.d., 1.8 µm particle size) using an ammonium format buffer at pH 2.8 and acetonitrile as eluent. Elution initiated with an isocratic-hold for 1.1 min, followed by a two-step linear gradient of up to 3 min, giving a total run time of 5 min including equilibration. The flow rate was kept at a constant 0.4 mL/min. UMAG quantitative analysis was performed by positive electrospray ionization, followed by tandem mass spectrometry (ESI-MS/MS). The analytical assay quantifies UMAG in a linear range from 0.25 to 20 µM using 70 µL of samples. Validation results demonstrated that UMAG concentrations can be accurately and precisely determined in samples from the primary assay. Evaluation of inhibitory activities of compounds measured by both the fluorescence and the LC-MS/MS method demonstrated that the values were in a very good agreement. This analytical method can be used to screen a compound library at a defined concentration of each compound to obtain the percentage of inhibition, or with a series of compound concentrations to obtain inhibition potency of a compound (IC50). The selected Lek compounds no. 1 and 2 from the virtual screening campaign were presented, tested and further investigated due to the expression of significant MurD ligase inhibitory action acquired by primary high throughput tests. This assay has been developed for MurD, but during development, chromatographic and MS/MS conditions for UM and UMA were studied and defined as well. Therefore, this analytical assay method can easily be applied to other Mur ligases (i.e. MurC, MurE) enzyme activity monitoring in the process of bacteria cell wall peptidoglycan formation. This method enables the identification of many different Mur ligase inhibitors in a continued search for new Gram positive and Gram negative bacteria antibiotics.
Keywords: Mur ligases, UDP-N-acetylmuramyl-L-alanine:D-glutamate (MurD) inhibitors, UNAM-Ala-Glu, LC-MS/MS, liquid chromatography, tandem mass spectrometry, antibiotics, drug discovery
Published in RUNG: 23.09.2016; Views: 6817; Downloads: 273
.pdf Full text (2,62 MB)

14.
KINETICS OF CELLULOSE DEGRADATION STUDIED USING SIZE EXCLUSION CHROMATOGRAPHY
Aneta Balažic Fabjan, 2016, master's thesis

Abstract: For more than five centuries, paper has been the predominant carrier of information and numerous medieval manuscripts bear witness of its durability. However, increasing demand for paper led to several changes in its production in the 19th century. High quality rag fibres were replaced by inferior wood-originating ones. Acid manufacturing technology was introduced which, due to its simplicity and low cost, continued to be used until the end of the 20th century. Inherently stable paper rapidly degrades in the presence of acids and its decay is further promoted by the poor storage conditions and environmental pollutants. As a result, the amount of degraded paper in libraries, archives and museums is reaching enormous proportions. In order to prolong the usable time of the vast quantities of original materials, paper collections may be deacidified and/or stored at lower temperatures. While preservation options are known, lack of the competent comparative studies leaves collection keepers hesitant of their use. The introductory part of the project is focused on development of analytical methodologies and model materials, representative of historical acid paper. As uniqueness and inherent value of cellulose-based cultural heritage limits the use of analytical methodologies to the non-destructive or micro-destructive ones. A new methodology for determination of the condition of paper was developed. The analytical technique-size exclusion chromatography for the first time allows us to reproducible determine the condition of paper which contains a significant amount of wood derived lignin. A few fibres suffice for the analysis, which renders the methodology suitable for characterisation of historical materials. The results of the research will represent the effect of deacidification processes with use of micro destructive analytical methodologies. As written word is all what we have for our legacy from generation to generation, evaluating preservation strategies for decaying collections, safekeeping and long term access to the endangered written cultural heritage is one of the most important facts.
Keywords: paper, size exclusion chromatography, kinetics, deacidification process
Published in RUNG: 02.09.2016; Views: 6288; Downloads: 280
.pdf Full text (1,33 MB)

15.
Highly Sensitive Determination of Pyoverdine in Cloud Water by HPLC-Thermal Lens Spectrometry
Leja Goljat, Mitja Martelanc, Virginie Vinatier, Anne-Marie Delort, Mladen Franko, 2016, published scientific conference contribution abstract

Abstract: New method for pyoverdine and Fe(III)-pyoverdine detection was developed. Two isomers of pyoverdine and two isomers of Fe(III)-pyoverdine were separated isocraticaly on reversed-phase (RP)-C18 chromatograhic column and detected by DAD, FLD and TLS. HPLC-TLS method enables separation and determination of pyoverdine and Fe(III)-pyoverdine in a single run and excels in superior sensitivities when compared to conventional HPLC-DAD system.
Keywords: Pyoverdine, Fe(III)-pyoverdine, cloud water, high-performance liquid chromatography, thermal lens spectrometry
Published in RUNG: 04.07.2016; Views: 5482; Downloads: 0

16.
Thermal lens spectrometry - still a technique on the horizon?
Mladen Franko, 2015

Abstract: In 1980’s thermal lens spectrometry (TLS) was still considered as a “spectrometric technique on the horizon” as one can also read from one of the textbooks on spectrochemical analysis of that time. Intensive development of thermal lens instrumentation and methods of chemical analysis and material characterisation has however resulted in substantial progress in this field, which is evident from important instrumental innovations and first commercial instruments (i.e. thermal lens microscopes -TLM) designed for lab-on-a-chip chemistry as well as from novel applications of TLS in various areas, where highly sensitive and rapid chemical analysis of complex samples is needed, including food safety and quality control, environmental analysis and biomedical diagnostics. This presentation is a review of most significant contributions and applications of thermal lens spectrometry, with emphasis on most recent achievements in instrumentation, which culminated into construction of novel optimized TLM instruments, capable of exploiting the tuneability of incoherent light sources and enabled novel applications particularly in micro-fluidics. Based on latest progress relying on bio-analytical assays and micro-fluidic flow injection with TLM detection we have also witnessed firs routine applications of TLS in analytical and diagnostic laboratories, which on wine side actually classifies TLS as a conventional and routine analytical tool, but at the same time opens new horizons for development and applications of this ultrasensitive and rapid spectrometric technique.
Keywords: Thermal lens spectrometry, applications, Liquid chromatography, flow injection analysis, bioanalytical methods
Published in RUNG: 29.03.2016; Views: 6422; Downloads: 0
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