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1.
Ultrahigh-Energy multi-messengers at the Pierre Auger Observatory
Francisco Pedreira, Andrej Filipčič, Gašper Kukec Mezec, Ahmed Saleh, Samo Stanič, Marta Trini, Serguei Vorobiov, Lili Yang, Danilo Zavrtanik, Marko Zavrtanik, Lukas Zehrer, 2019, objavljeni znanstveni prispevek na konferenci

Opis: The study of correlations between observations of different messengers from extreme sources of the Universe has emerged as an outstanding way to make progress in astrophysics. The Pierre Auger Observatory is capable of significant contributions as an ultra-high energy particle detector, particularly through its capability to search for inclined showers produced by neutrinos. We describe the neutrino searches made with the Observatory with particular emphasis on the recent results following the detections of gravitational waves from binary mergers with Advanced LIGO and VIRGO, leading to competitive limits.
Ključne besede: ultra-high-energy (UHE) cosmic rays (CRs), Pierre Auger Observatory, UHE neutrinos, multi-messenger astrophysics
Objavljeno v RUNG: 11.10.2023; Ogledov: 809; Prenosov: 5
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2.
Studies of the UHECR Mass Composition and Hadronic Interactions with the FD and SD of the Pierre Auger Observatory
J.M. Carceller, Andrej Filipčič, Gašper Kukec Mezek, Ahmed Saleh, Samo Stanič, Marta Trini, Serguei Vorobiov, Lili Yang, Danilo Zavrtanik, Marko Zavrtanik, Lukas Zehrer, 2019, objavljeni znanstveni prispevek na konferenci

Opis: With data on the depth of maximum Xmax collected during more than a decade of operation of the Pierre Auger Observatory, we report on the inferences on the mass composition of UHECRs in the energy range E = 10[sup]17.2 − 10[sup]19.6 eV and on the measurements of the proton-air cross section for energies up to 10[sup]18.5 eV. We also present the results on Xmax obtained using the information on the particle arrival times recorded by the SD stations allowing us to extend the Xmax measurements up to 10[sup]20 eV. The inferences on mass composition, in particular using the data of the SD, are subject to systematic uncertainties due to uncertainties in the description of hadronic interactions at ultra-high energies. We discuss this problem with respect to the properties of the muonic component of extensive air-showers as derived from the SD data.
Ključne besede: ultra-high-energy cosmic rays (UHECRs), extensive air showers (EAS), EAS muonic component, EAS electromagnetic component, Pierre Auger Observatory, UHECR mass composition, UHECR hadronic interactions
Objavljeno v RUNG: 11.10.2023; Ogledov: 659; Prenosov: 8
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3.
Measurement of the cosmic ray spectrum with the Pierre Auger Observatory
Daniela Mockler, Andrej Filipčič, Gašper Kukec Mezek, Ahmed Saleh, Samo Stanič, Marta Trini, Serguei Vorobiov, Lili Yang, Danilo Zavrtanik, Marko Zavrtanik, Lukas Zehrer, 2019, objavljeni znanstveni prispevek na konferenci

Opis: The flux of ultra-high energy cosmic rays above 3×10[sup]17 eV has been measured with unprecedented precision at the Pierre Auger Observatory. The flux of the cosmic rays is determined by four different measurements. The surface detector array provides three data sets, two formed by dividing the data into two zenith angle ranges, and one obtained from a nested, denser detector array. The fourth measurement is obtained with the fluorescence detector. By combining all four data sets, the all-sky flux of cosmic rays is determined. The spectral features are discussed in detail and systematic uncertainties are addressed.
Ključne besede: ultra-high-energy cosmic rays (UHECRs), Pierre Auger Observatory, UHECR energy spectrum
Objavljeno v RUNG: 11.10.2023; Ogledov: 682; Prenosov: 6
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4.
Status of the AugerPrime upgrade of the Pierre Auger Observatory
Niraj Dhital, Andrej Filipčič, Gašper Kukec Mezek, Ahmed Saleh, Samo Stanič, Marta Trini, Serguei Vorobiov, Lili Yang, Danilo Zavrtanik, Marko Zavrtanik, Lukas Zehrer, 2019, objavljeni znanstveni prispevek na konferenci

Opis: The Pierre Auger Observatory has been very successful in determining many aspects of the highest-energy cosmic rays including, among others, the flux suppression at energies above 4 × 10[sup]19 eV, stringent upper limits on photon and neutrino fluxes at ultra-high energies and an unexpected evolution of the mass composition with energy. We expect an extension of the frontiers of our knowledge on these aspects from a major upgrade of the Observatory. The upgrade, known as AugerPrime, will include an addition of a 4 sq. m Surface Scintillator Detector atop each water-Cherenkov station of the Surface array. The new detectors will provide us with an unprecedented opportunity to perform a complementary measurement of the shower particles and thus determine the primary mass composition with good accuracy on an event-by-event basis. AugerPrime will also include an upgrade of electronics, installation of the AMIGA Underground Muon Detector and a change of observation mode of the Fluorescence Detector, which will increase its current duty cycle by about 50%. Current status of the upgrade with the main focus on the Surface Scintillator Detectors will be presented, following a brief description of the physics motivation for the upgrade.
Ključne besede: ultra-high-energy cosmic rays (UHECRs), Pierre Auger Observatory, AugerPrime upgrade
Objavljeno v RUNG: 11.10.2023; Ogledov: 910; Prenosov: 5
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5.
Results from the Pierre Auger Observatory
Esteban Roulet, Andrej Filipčič, Gašper Kukec Mezek, Ahmed Saleh, Samo Stanič, Marta Trini, Serguei Vorobiov, Lili Yang, Danilo Zavrtanik, Marko Zavrtanik, Lukas Zehrer, 2019, objavljeni znanstveni prispevek na konferenci

Opis: Some of the results on ultrahigh-energy cosmic rays that have been obtained with the Pierre Auger Observatory are presented. These include measurements of the spectrum, composition and anisotropies. Possible astrophysical scenarios that account for these results are discussed.
Ključne besede: ultra-high-energy cosmic rays (UHECRs), Pierre Auger Observatory, UHECR energy spectrum, UHECR anisotropies, UHECR mass composition
Objavljeno v RUNG: 11.10.2023; Ogledov: 738; Prenosov: 5
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6.
Changes in exhaled volatile organic compounds following indirect bronchial challenge in suspected asthma
Adam Peel, Ran Wang, Waqar Ahmed, Iain R. White, Maxim Wilkinson, Yoon K. Loke, Andrew M. Wilson, Stephen J. Fowler, 2023, izvirni znanstveni članek

Opis: Background Inhaled mannitol provokes bronchoconstriction via mediators released during osmotic degranulation of inflammatory cells, and, hence represents a useful diagnostic test for asthma and model for acute attacks. We hypothesised that the mannitol challenge would trigger changes in exhaled volatile organic compounds (VOCs), generating both candidate biomarkers and novel insights into their origin. Methods Participants with a clinical diagnosis of asthma, or undergoing investigation for suspected asthma, were recruited. Inhaled mannitol challenges were performed, followed by a sham challenge after 2 weeks in participants with bronchial hyper-responsiveness (BHR). VOCs were collected before and after challenges and analysed using gas chromatography–mass spectrometry. Results Forty-six patients (mean (SD) age 52 (16) years) completed a mannitol challenge, of which 16 (35%) were positive, and 15 of these completed a sham challenge. Quantities of 16 of 51 identified VOCs changed following mannitol challenge (p<0.05), of which 11 contributed to a multivariate sparse partial least square discriminative analysis model, with a classification error rate of 13.8%. Five of these 16 VOCs also changed (p<0.05) in quantity following the sham challenge, along with four further VOCs. In patients with BHR to mannitol distinct postchallenge VOC signatures were observed compared with post-sham challenge. Conclusion Inhalation of mannitol was associated with changes in breath VOCs, and in people with BHR resulted in a distinct exhaled breath profile when compared with a sham challenge. These differentially expressed VOCs are likely associated with acute airway inflammation and/or bronchoconstriction and merit further investigation as potential biomarkers in asthma.
Ključne besede: asthma, exhaled volatile organic compounds, pulmonology, breath metabolomics
Objavljeno v RUNG: 31.07.2023; Ogledov: 865; Prenosov: 3
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7.
Analysis of exhaled breath to identify critically ill patients with ventilator-associated pneumonia
T. W. Felton, Waqar Ahmed, Iain R. White, Pouline M. van Oort, Nicholas J. W. Rattray, C. Docherty, Jonathan Bannard-Smith, J.B. Morton, Ingeborg Welters, R. McMullan, 2023, izvirni znanstveni članek

Opis: Ventilator-associated pneumonia commonly occurs in critically ill patients. Clinical suspicion results in overuse of antibiotics, which in turn promotes antimicrobial resistance. Detection of volatile organic compounds in the exhaled breath of critically ill patients might allow earlier detection of pneumonia and avoid unnecessary antibiotic prescription. We report a proof of concept study for non-invasive diagnosis of ventilator-associated pneumonia in intensive care (the BRAVo study). Mechanically ventilated critically ill patients commenced on antibiotics for clinical suspicion of ventilator-associated pneumonia were recruited within the first 24 h of treatment. Paired exhaled breath and respiratory tract samples were collected. Exhaled breath was captured on sorbent tubes and then analysed using thermal desorption gas chromatography–mass spectrometry to detect volatile organic compounds. Microbiological culture of a pathogenic bacteria in respiratory tract samples provided confirmation of ventilator-associated pneumonia. Univariable and multivariable analyses of volatile organic compounds were performed to identify potential biomarkers for a ‘rule-out’ test. Ninety-six participants were enrolled in the trial, with exhaled breath available from 92. Of all compounds tested, the four highest performing candidate biomarkers were benzene, cyclohexanone, pentanol and undecanal with area under the receiver operating characteristic curve ranging from 0.67 to 0.77 and negative predictive values from 85% to 88%. Identified volatile organic compounds in the exhaled breath of mechanically ventilated critically ill patients show promise as a useful non-invasive ‘rule-out’ test for ventilator-associated pneumonia.
Ključne besede: breath, diagnosis, ventilator-associated pneumonia
Objavljeno v RUNG: 05.04.2023; Ogledov: 1017; Prenosov: 13
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8.
Nanoscopic roughness characterization of chitosan with buried graphene oxide for fuel cell application
Ahmed Kreta, Egon Pavlica, Mojca Božič, Gvido Bratina, 2023, objavljeni znanstveni prispevek na konferenci

Ključne besede: AFM, chitosan, graphene oxide, fuel cells, membrane, roughness
Objavljeno v RUNG: 01.03.2023; Ogledov: 1307; Prenosov: 3
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9.
Microbial volatiles as diagnostic biomarkers of bacterial lung infection in mechanically ventilated patients
Waqar M Ahmed, Dominic Fenn, Iain R. White, Breanna Dixon, Tamara M E Nijsen, Hugo H Knobel, Paul Brinkman, Pouline M P van Oort, Marcus J Schultz, Paul Dark, Royston Goodacre, Timothy Felton, Lieuwe D J Bos, Stephen J Fowler, 2022, izvirni znanstveni članek

Opis: Background Early and accurate recognition of respiratory pathogens is crucial to prevent increased risk of mortality in critically ill patients. Microbial-derived volatile organic compounds (mVOCs) in exhaled breath could be used as non-invasive biomarkers of infection to support clinical diagnosis. Methods In this study, we investigated the diagnostic potential of in vitro confirmed mVOCs in the exhaled breath of patients under mechanically ventilation from the BreathDx study. Samples were analysed by thermal desorption-gas chromatography-mass spectrometry (TD-GC-MS). Results Pathogens from bronchoalveolar lavage (BAL) cultures were identified in 45/89 patients and S. aureus was the most commonly identified pathogen (n = 15). Out of 19 mVOCs detected in the in vitro culture headspace of four common respiratory pathogens (Staphylococcus aureus, Pseudomonas aeruginosa, Klebsiella pneumoniae and Escherichia coli), 14 were found in exhaled breath samples. Higher concentrations of two mVOCs were found in the exhaled breath of patients infected with S. aureus compared to those without (3-methylbutanal p < 0.01. AUROC = 0.81-0.87 and 3-methylbutanoic acid p = 0.01. AUROC = 0.79-0.80). In addition, bacteria identified from BAL cultures which are known to metabolise tryptophan (Escherichia coli, Klebsiella oxytoca and Haemophilus influenzae) were grouped and found to produce higher concentrations of indole compared to breath samples with culture-negative (p = 0.034) and other pathogen-positive (p = 0.049) samples. Conclusions This study demonstrates the capability of using mVOCs to detect the presence of specific pathogen groups with potential to support clinical diagnosis. Although not all mVOCs were found in patient samples within this small pilot study, further targeted and qualitative investigation is warranted using multi-centre clinical studies.
Ključne besede: Breath, VOCs, infection, respiratory pathogens, VAP
Objavljeno v RUNG: 28.11.2022; Ogledov: 1242; Prenosov: 0
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10.
Composition and diversity analysis of the lung microbiome in patients with suspected ventilator-associated pneumonia
Dominic Fenn, Mahmoud Abdel-Aziz, Pouline van Oort, Paul Brinkman, Waqar Ahmed, Timothy Felton, Antonio Artigas, Pedro Póvoa, Ignacio Martin-Loeches, Marcus Schultz, Paul Dark, Stephen Fowler, Iain R. White, 2022, izvirni znanstveni članek

Opis: Background: Ventilator-associated pneumonia (VAP) is associated with high morbidity and health care costs, yet diagnosis remains a challenge. Analysis of airway microbiota by amplicon sequencing provides a possible solution, as pneumonia is characterised by a disruption of the microbiome. However, studies evaluating the diagnostic capabilities of microbiome analysis are limited, with a lack of alignment on possible biomarkers. Using bronchoalveolar lavage fluid (BALF) from ventilated adult patients suspected of VAP, we aimed to explore how key characteristics of the microbiome differ between patients with positive and negative BALF cultures and whether any differences could have a clinically relevant role. Methods: BALF from patients suspected of VAP was analysed using 16s rRNA sequencing in order to: (1) differentiate between patients with and without a positive culture; (2) determine if there was any association between microbiome diversity and local inflammatory response; and (3) correctly identify pathogens detected by conventional culture. Results: Thirty-seven of 90 ICU patients with suspected VAP had positive cultures. Patients with a positive culture had significant microbiome dysbiosis with reduced alpha diversity. However, gross compositional variance was not strongly associated with culture positivity (AUROCC range 0.66–0.71). Patients with a positive culture had a significantly higher relative abundance of pathogenic bacteria compared to those without [0.45 (IQR 0.10–0.84), 0.02 (IQR 0.004–0.09), respectively], and an increased interleukin (IL)-1β was associated with reduced species evenness (rs = − 0.33, p < 0.01) and increased pathogenic bacteria presence (rs = 0.28, p = 0.013). Untargeted 16s rRNA pathogen detection was limited by false positives, while the use of pathogen-specific relative abundance thresholds showed better diagnostic accuracy (AUROCC range 0.89–0.998). Conclusion: Patients with positive BALF culture had increased dysbiosis and genus dominance. An increased caspase-1-dependent IL-1b expression was associated with a reduced species evenness and increased pathogenic bacterial presence, providing a possible causal link between microbiome dysbiosis and lung injury development in VAP. However, measures of diversity were an unreliable predictor of culture positivity and 16s sequencing used agnostically could not usefully identify pathogens; this could be overcome if pathogen-specific relative abundance thresholds are used.
Ključne besede: Microbiome, Next-generation sequencing, Ventilator-associated pneumonia
Objavljeno v RUNG: 26.10.2022; Ogledov: 1027; Prenosov: 0
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