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1.
SINGLE NUCLEOTIDE POLYMORPHISMS OF THE CHROMOSOME SEGREGATION GENES INVOLVED IN THE DEVELOPMENT OF GASTRIC CANCER
Marija Rogar, 2016, doktorska disertacija

Opis: INTRODUCTION. Gastric cancer represents the fifth most frequently diagnosed cancer in the world. Despite numerous research studies, mechanisms leading to disease are poorly known and unclear. At the molecular level, many changes are involved in the development of gastric cancer, including malfunction of chromosome segregation genes. These abnormalities can lead to chromosomal instability (CIN). Segregation gene function can be affected by the low penetrance errors which include polymorphisms. AIM. The aim of this study is to examine the effect of selected polymorphisms in specific segregation genes on gastric cancer development. HYPOTHESIS. The study focused on exploring genotypes of selected polymorphisms in specific mitotic segregation genes. Those that differ significantly between the subjects and the healthy control population, may be associated with higher risk for developing gastric cancer or with certain clinical and histopathological characteristics, and may have effect on the survival of gastric cancer patients. METHODS. 30 polymorphisms in genes BUB1B, CASC5, ESPL1, PTTG1, SMC1A, TPX2, TTK and ZWINT were included in the study. Subjects were compared with the control group. Polymorphisms were determined using quantitative real-time PCR (qPCR), restriction fragment length polymorphism (RFLP) and DNA sequencing. RESULTS. The association between polymorphisms rs2277559 (BUB1B), rs2241666 (ZWINT), rs11858113 (CASC5) and rs11855334 (CASC5) and increased risk of developing gastric cancer in male population was determined. As concerning rs11855334, statistically significant difference was also observed in the genotype distribution between the whole population of subjects and controls. The association between the genotypes of polymorphisms (in gene BUB1B) rs2277559, rs2290551, rs1801376, rs1047130, rs1565866, rs2277560 and Lauren classification was recognized. Genotypes of polymorphisms rs1801376 (BUB1B), rs11855334 (CASC5), rs2241666 (ZWINT), rs2910101 (PTTG1) and rs1047130 (BUB1B) are linked to different tumour differentiation grades. Survival analysis revealed association between the lymph node involvement and perineural invasion. Statistically higher frequencies of haplotypes G-A-G-T-G-G-A, G-G-A-G-A-A-G and A-G-G-T-A-G-A in gene BUB1B and of haplotypes A-A-A-C and C-C-G-T in gene ESPL1 were observed in gastric cancer patients, whereas haplotypes A-C-A-T and C-A-G-T in gene ESPL1 were significantly more frequent in the control group. Association with gastric cancer was not noted with other polymorphisms. CONCLUSIONS. The association between specific polymorphisms of selected chromosome segregation genes and gastric cancer was recognized. Findings could provide guidelines for further research and polymorphisms linked to gastric cancer could serve as potential diagnostic and prognostic biomarkers.
Najdeno v: ključnih besedah
Ključne besede: gastric cancer, chromosomal instability, polymorphisms, segregation genes
Objavljeno: 27.07.2016; Ogledov: 4733; Prenosov: 313
.pdf Polno besedilo (2,87 MB)

2.
Abscisic acid-regulated water channels and their role in plant acclimation and tolerance to water stress
Christina Paparokidou, 2014, magistrsko delo

Opis: The yield of worldwide crop production has already been negatively affected by high salinity and water deficiency prevailing in many of the cultivated lands (Yan et al., 2013; Serraj et al., 2011; Golldack et al., 2011). Consequently, reduced crop production is a major problem in terms of food sustainability world-wide (Spiertz, 2013). Plants as sessile organisms have to dynamically and constantly cope with various types of stress in their environment. Although stress perception by plants remains elusive (Gan et al., 2010; Shachar-Hill et al., 2013; Wu et al., 2012), the stress-responsive mechanisms that follow are starting to be better understood (Wasilewska et al., 2008; Kohli et al., 2013; Osakabe et al., 2013). Abscisic acid (ABA) is a central plant hormone produced in response to abiotic stress and has been shown to play important roles in plant acclimation and tolerance towards stress (Nakashima and Yamaguchi-Shinozaki, 2013; Osakabe et al., 2014). ABA accumulation triggers the expression of a plethora of genes within the plant cell (Liu et al., 2013). The ABA-regulated genes are various in nature, including enzymes involved in osmolyte and cell wall biosynthesis, detoxifying enzymes, enzymes for fatty acid metabolism, proteinase inhibitors, macromolecule protective proteins, lipid transfer proteins, ion transporters and water channels, transcription factors (TFs), protein kinases, protein phosphatases and proteinases (Roychoudhury et al., 2013; Rock, 2000). In this literature review the role of water channel-encoding genes, namely aquaporins (AQPs), in plant water stress will be discussed. The aim of this study is to understand how ABA-regulated AQPs are able to contribute to the plant’s tolerance and acclimation during water stress. The knowledge gained from this study is important for the engineering of salt and drought resistant crops within the modern agricultural context, thus contributing to world’s crop sustainable production (Jacobs et al., 2011; Park et al., 2005; Kujur et al., 2013).
Najdeno v: ključnih besedah
Povzetek najdenega: ...triggers the expression of a plethora of genes within the plant cell (Liu et al.,...
Ključne besede: Abscisic acid (ABA), ABA-regulated genes, aquaporins (AQPs), ABA-regulated AQPs, ABA-dependent water stress, root hydraulic conductance (Lpr), leaf hydraulic conductance (Kleaf), stomatal conductance (gs), AQP bioengineering
Objavljeno: 03.05.2022; Ogledov: 275; Prenosov: 0
.pdf Polno besedilo (1,06 MB)

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