1. Ge(2), Ge(1) and Ge-E´ centers in irradiated Ge-doped silicaLayla Martin-Samos, Nicolas Richard, Sylvain Girard, A. Boukenter, Youcef Ouerdane, Luigi Giacomazzi, 2015, izvirni znanstveni članek Najdeno v: ključnih besedah Povzetek najdenega: ...silica, density-functional theory, defects, ... Ključne besede: silica, density-functional theory, defects Objavljeno: 17.05.2016; Ogledov: 3604; Prenosov: 106 Polno besedilo (0,00 KB) |
2. Molecule-Driven Substrate Reconstruction in the Two-Dimensional Self-Organization of Fe-Phthalocyanines on Au(110)Sara Fortuna, Pierluigi Gargiani, Maria Grazia Betti, Carlo Mariani, Arrigo Calzolari, Silvio Modesti, Stefano Fabris, 2012, izvirni znanstveni članek Opis: The structural patterns formed by molecular self-assembly at surfaces are usually controlled by the relative strengths of the intermolecular and molecule–substrate interactions. An additional steering effect is present when the substrate can easily reconstruct upon molecular adsorption, which therefore drives a self-templating effect on the metal support. This is here demonstrated for the model case of Fe-phthalocyanine molecules adsorbed on the Au(110) surface. Scanning tunneling microscopy shows that molecular adsorption promotes a local (1 × 5) surface reconstruction, which drives the assembly of molecular chains along the [11̅0] direction. The order and periodicity of the molecular assemblies are determined with low energy electron diffraction patterns. Density functional theory calculations reveal the energetic origins of the molecule-driven substrate reconstruction. Since the function of molecular overlayers at surfaces is strongly correlated to their structure, these results have implications in the design of new metal/molecular interfaces. Najdeno v: ključnih besedah Povzetek najdenega: ...determined with low energy electron diffraction patterns. Density functional theory calculations reveal the energetic origins... Ključne besede: self-assembly, phthalocyanine, Au(110), DFT, density functional theory, simulation, surface, recontruction Objavljeno: 11.10.2016; Ogledov: 3620; Prenosov: 0 Polno besedilo (2,97 MB) |
3. Formation of Hybrid Electronic States in FePc Chains Mediated by the Au(110) SurfaceMaria Grazia Betti, Pierluigi Gargiani, Carlo Mariani, Stefano Turchini, Nicola Zema, Sara Fortuna, Arrigo Calzolari, Stefano Fabris, 2012, izvirni znanstveni članek Opis: Iron–phthalocyanine (FePc) molecules deposited on the Au(110) surface self-organize in ordered chains driven by the reconstructed Au channels. The interaction process induces a rehybridization of the electronic states localized on the central metal atom, breaking the 4-fold symmetry of the molecular orbitals of the FePc molecules. The molecular adsorption is controlled by a symmetry-determined mixing between the electronic states of the Fe metal center and of the Au substrate, as deduced by photoemission and absorption spectroscopy exploiting light polarization. DFT calculations rationalize this mixing of the Fe and Au states on the basis of symmetry arguments. The calculated electronic structure reproduces the main experimental spectral features, which are associated to a distorted molecular structure displaying a trigonal bipyramidal geometry of the ligands around the metal center. Najdeno v: ključnih besedah Povzetek najdenega: ...phthalocyanine, Au(110), gold, surface, DFT, density functional theory, calculation, simulation... Ključne besede: phthalocyanine, Au(110), gold, surface, DFT, density functional theory, calculation, simulation Objavljeno: 13.10.2016; Ogledov: 3781; Prenosov: 0 Polno besedilo (3,25 MB) |
4. Structural phases of ordered FePc-nanochains self-assembled on Au(110)Betti Maria Grazia, Pierluigi Gargiani, Carlo Mariani, Roberto Biagi, Jun Fujii, Giorgio Rossi, Andrea Resta, Stefano Fabris, Sara Fortuna, Xavier Torrelles, Manvendra Kumar, Maddalena Pedio, 2012, izvirni znanstveni članek Opis: Iron-phthalocyanine molecules deposited on the Au(110) reconstructed channels assemble into one-dimensional molecular chains, whose spatial distribution evolves into different structural phases at increasing molecular density. The plasticity of the Au channels first induces an ordered phase with a 5×5 symmetry, followed by a second long-range ordered structure composed by denser chains with a 5×7 periodicity with respect to the bare Au surface, as observed in the low-energy electron-diffraction (LEED) and grazing incidence X-ray diffraction (GIXRD) patterns. The geometry of the FePc molecular assemblies in the Au nanorails is determined by scanning tunneling microscopy (STM). For the 5×7 phases, the GIXRD analysis identifies a “4-3” rows profile along the [001] direction in the Au surface and an on-top FePc adsorption site, further confirmed by density functional theory (DFT) calculations. The latter also reveals the electronic mixing of the interface states. The chain assembly is driven by the molecule–molecule interaction and the chains interact with the Au nanorails via the central metal atom, while the chain–chain distance in the different structural phases is primarily driven by the plasticity of the Au surface. Najdeno v: ključnih besedah Povzetek najdenega: ...into different structural phases at increasing molecular density. The plasticity of the Au channels first... ...FePc adsorption site, further confirmed by density functional theory (DFT) calculations. The latter also reveals... Ključne besede: STM, LEED, DFT, density functional theory, phthalocyanine, Au(110), gold, surface Objavljeno: 13.10.2016; Ogledov: 3726; Prenosov: 0 Polno besedilo (1,33 MB) |
5. Spin and orbital configuration of metal phthalocyanine chains assembled on the Au(110) surfaceGargiani Pierluigi, Giorgio Rossi, Roberto Biagi, Valdis Corradini, Maddalena Pedio, Sara Fortuna, Arrigo Calzolari, Stefano Fabris, Julio Criginski Cezar, N. B. Brookes, Maria Grazia Betti, 2013, izvirni znanstveni članek Opis: The spin and orbital configuration of magnetic metal phthalocyanines (MPcs) deposited on metallic substrates are strongly influenced by the rehybridization of the molecular states with the underlying metal. FePc, CoPc, and CuPc isolated molecules are archetypal systems to investigate the interrelationship between magnetic moments and orbital symmetry after deposition on a metallic substrate. MPcs form long-range ordered chains self-assembled along the reconstructed channels of the Au(110) surface. X-ray magnetic circular dichroism from the L2,3 absorption edges of Fe, Co, and Cu shows that the orbital and spin configuration are strongly modified upon adsorption on the Au(110) surface if the orbitals responsible of the magnetic moment are involved in the interaction process. The magnetic moment for a single layer of molecular chains is completely quenched for the CoPc molecules, fully preserved for the CuPc and reduced for the FePc ones. The modified magnetic configuration is confined to the very interface layer, i.e., to the MPc molecules bound to the metal substrate up to the compact packing of the single layer. The different response can be rationalized in terms of the symmetry/orientation of the metal-ion d states interacting with the substrate states, as indicated by density functional theory calculations in agreement with experimental findings. Najdeno v: ključnih besedah Povzetek najdenega: ...with the substrate states, as indicated by density functional theory calculations in agreement with experimental... Ključne besede: phthalocyanine, Au(110), gold, self-assembly, pattern, configuration, density functional theory, DFT, CuPc, FePc Objavljeno: 12.10.2016; Ogledov: 3628; Prenosov: 0 Polno besedilo (1,73 MB) |
6. Phase behaviour of self-assembled monolayers controlled by tuning physisorbed and chemisorbed states: a lattice-model viewSara Fortuna, David L. Cheung, Karen Johnston, 2016, izvirni znanstveni članek Opis: The self-assembly of molecules on surfaces into 2D structures is important for the bottom-up fabrication of functional nanomaterials, and the self-assembledstructure depends on the interplay between molecule-molecule interactions and molecule-surface interactions. Halogenated benzene derivatives on platinum have been shown to have two distinct adsorption states: a physisorbed state and a chemisorbed state, and the interplay between the two can be expected to have a profound effect on the self-assembly and phase behaviour of these systems. We developed a lattice model that explicitly includes both adsorption states, with representative interactions parameterised using density functional theory calculations. This model was used in Monte Carlo simulations to investigate pattern formation of hexahalogenated benzene molecules on the platinumsurface. Molecules that prefer the physisorbed state were found to self-assemble with ease, depending on the interactions between physisorbed molecules. In contrast, molecules that preferentially chemisorb tend to get arrested in disordered phases. However, changing the interactions between chemisorbed and physisorbed molecules affects the phase behaviour. We propose functionalising molecules in order to tune their adsorption states, as an innovative way to control monolayer structure, leading to a promising avenue for directed assembly of novel 2D structures. Najdeno v: ključnih besedah Povzetek najdenega: ...adsorption states, with representative interactions parameterised using density functional theory calculations. This model was used... Ključne besede: lattice model, hexagonal lattice, Monte Carlo, DFT, density functional theory, benzene, physisorption, chemisorption, halogenated Objavljeno: 11.10.2016; Ogledov: 3530; Prenosov: 0 Polno besedilo (5,75 MB) |
7. Oxalic acid adsorption states on the clean Cu(110) surfaceSara Fortuna, 2016, izvirni znanstveni članek Opis: Carboxylic acids are known to assume a variety of configurations on metallic surfaces. In particular oxalic acid on the Cu(110) surface has been proposed to assume a number of upright configurations. Here we explore with DFT calculations the possible structures that oxalic acid can form on copper 110 at different protonation states, with particular attention at the possibility of forming structures composed of vertically standing molecules. In its fully protonated form it is capable of anchoring itself on the surface thanks to one of its hydrogen-free oxygens. We show the monodeprotonated upright molecule with two oxygens anchoring it on the surface to be the lowest energy conformation of a single oxalic molecules on the Cu(110) surface. We further show that it is possible for this configuration to form dense hexagonally arranged patterns in the unlikely scenario in which adatoms are not involved. Najdeno v: ključnih besedah Povzetek najdenega: ...oxalic acid, oxalate, cu(110), copper, surface, adsorption, density functional theory, DFT... Ključne besede: oxalic acid, oxalate, cu(110), copper, surface, adsorption, density functional theory, DFT Objavljeno: 11.10.2016; Ogledov: 3404; Prenosov: 0 Polno besedilo (1,21 MB) |
8. Characterization of Mg low-index surfaces by first-principlesMiha Gunde, 2017, magistrsko delo Opis: In this work, three surfaces, namely, Mg(0001), Mg(10 ̄1 0) and Mg(11 ̄2 0) are investigated by means of Density Functional Theory and Generalized Gradient Approximation first-principle calculations. The surfaces have been characterized in terms of their interlayer distances, surface energies, Projected Density of States and Surface Core Level Shifts. Contrary to what was found in previous studies based on Density Functional Theory-Local Density Approximation, the use of Generalized Gradient Approximation exchange correlation functional unravels the oscillatory behavior of both interlayer distances and Surface Core Level Shifts of Mg(10 ̄1 0). Moreover,
the Projected Density Of States of un-reconstructed Mg(11 ̄2 0) exhibit the typical quantisation of electronic levels associated to a 2D-confinement of a 3D nearly-free electron gas, as observed in nano-wires, and a Peierls instability along the unconfined direction. Different possible reconstructions on Mg(11 ̄2 0) have then been investigated. In particular, it is found that the
surface energy of (2X1) and (3X1) reconstructions is almost degenerate and lower than the surface energy of the unreconstructed Mg(11 ̄2 0) surface. Because of the quasi-degeneracy of surface energies, Mg(11 ̄2 0) surface should be composed by a combination of all the quasi degenerate phases. Najdeno v: ključnih besedah Povzetek najdenega: ...̄2 0) are investigated by means of Density Functional Theory and Generalized Gradient Approximation first-principle... Ključne besede: Density Functional Theory, first-principle calculations, Mg surface, Surface Core-Level Shift, surface relaxation, surface reconstruction Objavljeno: 04.07.2017; Ogledov: 4815; Prenosov: 2040 Polno besedilo (1,77 MB) |
9. Paramagnetic centers in amorphous GeO2Nicolas Richard, Layla Martin-Samos, Luigi Giacomazzi, 2015, objavljeni znanstveni prispevek na konferenci Najdeno v: ključnih besedah Povzetek najdenega: ...germanium dioxide, defects, density-functional theory, EPR... Ključne besede: germanium dioxide, defects, density-functional theory, EPR Objavljeno: 03.10.2018; Ogledov: 2583; Prenosov: 0 Polno besedilo (575,92 KB) |
10. Carbon and Nitrogen K-Edge NEXAFS Spectra of Indole, 2,3-Dihydro-7-azaindole, and 3-FormylindoleAurora Ponzi, Elisa Bernes, Daniele Toffoli, Giovanna Fronzoni, Carlo Callegari, Alessandra Ciavardini, Michele DI Fraia, Robert Richter, Kevin Charles Prince, Hanan Sa'adeh, Michele Devetta, Davide Faccialà, Caterina Vozzi, Lorenzo Avaldi, Paola Bolognesi, Mattea Castrovilli, Daniele Catone, Marcello Coreno, Oksana Plekan, 2021, izvirni znanstveni članek Najdeno v: ključnih besedah Povzetek najdenega: ...features, Rydberg character, Theoretical spectra, Time dependent density functional theory... ...Carbon and nitrogen, General description, Hybrid functional, Near-edge X-ray absorption fine structure spectrum, Relevant... Ključne besede: Carbon and nitrogen, General description, Hybrid functional, Near-edge X-ray absorption fine structure spectrum, Relevant features, Rydberg character, Theoretical spectra, Time dependent density functional theory Objavljeno: 19.01.2022; Ogledov: 659; Prenosov: 0 Polno besedilo (4,29 MB) |