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Opis: The Zimm-Bragg (ZB) model serves as a fundamental framework for elucidating conformational transitions in biopolymers, offering simplicity and efficacy in processing experimental data. This study provides a comprehensive review of the Zimm-Bragg model and its Hamiltonian formulation, with particular emphasis on incorporating water interactions and chain size effects into the computational framework. We propose a modified ZB model that accounts for water-polypeptide interactions, demonstrating its ability to describe phenomena such as cold denaturation and helix-coil transitions. In the realm of NanoBioTechnologies, the manipulation of short polypeptide chains is commonplace. Experimental investigation of these chains in vitro often relies on techniques like Circular Dichroism (CD) and timeresolved infrared spectroscopy. Determining interaction parameters necessitates processing the temperature dependence of the normalized degree of helicity through model fitting. Leveraging recent advancements in the Hamiltonian formulation of the Zimm and Bragg model, we explicitly incorporate chain length and solvent effects into the theoretical description. The resulting expression for helicity degree adeptly fits experimental data, yielding hydrogen bonding energies and nucleation parameter values consistent with field standards. Differential Scanning Calorimetry (DSC) stands as a potent tool for measuring the specific heat profile of materials, including proteins. However, relating the measured profile to microscopic properties requires a suitable model for fitting. We propose a novel algorithm for processing DSC experimental data based on the ZB theory of protein folding in water. This approach complements the classical two-state paradigm and provides insights into protein-water and intraprotein hydrogen bonding energies. An analytical expression for heat capacity, considering water interaction, is derived and successfully applied to fit numerous DSC experimental datasets reported in the literature. Additionally, we compare this approach with the classical two-state model, demonstrating its efficacy in fitting DSC data. Furthermore, we have developed and launched a free online tool for processing CD and DSC experimental data related to protein folding, aiming to support scientific research.
Ključne besede: Zimm-Bragg model, conformational transitions, helix-coil transitions, cold denaturation, circular dichroism, differential scanning calorimetry, protein folding, water-protein interaction, hydrogen bonding energy, degree of helicity, short polypeptide chains, protein heat capacity, protein data analysis, dissertations
Objavljeno v RUNG: 27.01.2025; Ogledov: 818; Prenosov: 13
Celotno besedilo (5,12 MB)

Ključne besede: catalysis, hydrogen evolution
Objavljeno v RUNG: 30.09.2024; Ogledov: 977; Prenosov: 0
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Opis: The process of hydrogen evolution reaction (HER) through water electrolysis is an important technology for establishing the so called "hydrogen economy". Here we will cover different systems for electrocatalytic HER. Transition metal carbides and metal phosphides are alternative to platinum (Pt) and offer excellent electrocatalytic activity for HER. Pyrolysis of hexacarbonyl tungsten, W(CO)6, in 1-octadecene has been used to prepare colloidal tungsten, W, nanoparticles (NPs) [1]. The obtained W NPs has been spin-coated on graphite (C) electrodes. Heat treatment of the W/C electrodes at elevated temperatures (≥ 900°C) allows the preparation of metallic W and tungsten carbide (W2C@WC) thin films. The obtained W2C@WC electrodes were used for hydrogen evolution studies (HER) in 0.5M H2SO4. Cyclic voltammetry tests for 1000 cycles showed that W2C@WC exhibit long term stability without significant drop in current density. The overpotential defined at 10 mA/cm2 is 310 mV vs. RHE giving an excellent catalytic activity for HER. Iron phosphide electrocatalysts were synthesized using a triphenylphosphine (TPP) precursor. Different iron phosphide phases were synthesized at 300°C (Fe2P) and at 350°C ( FeP ) [2]. To enhance the catalytic activities of obtained iron phosphide particles heat-treatments were carried out at elevated temperatures. Annealing at 500°C under reductive atmosphere induced structural changes in the samples: (i) Fe2P provided a pure Fe3P phase (Fe3P−500°C) and (ii) FeP transformed into a mixture of iron phosphide phases (Fe2P/FeP−500°C). The lowest electrode potential of 110 mV vs. a reversible hydrogen electrode (RHE) at 10 mA cm−2 was achieved with Fe2P/FeP−500°C catalyst
Ključne besede: Fe2P, electrocatalysis, hydrogen, ammonia
Objavljeno v RUNG: 13.12.2023; Ogledov: 2656; Prenosov: 5
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Opis: Future high-capacity energy storage technologies are crucial for a highly renewable energy mix, and their mass deployment must rely on cheap and abundant materials, such as iron chloride. The iron chloride electrochemical cycle (ICEC), suitable for long-term grid energy storage using a redox potential change of Fe2+/Fe, involves the electrolysis of a highly concentrated aqueous FeCl2 solution yielding solid iron deposits. For the high overall energy efficiency of the cycle, it is crucial maximizing the energy efficiency of the electrolysis process. The thesis presents a study of the influence of electrolysis parameters on energy efficiency, performed in an industrial-type electrolyzer system. We studied the conductivity of the FeCl2 solution as a function of concentration and temperature and correlated it with the electrolysis energy efficiency as a function of current density. The contribution of the resistance polarization increases with the current density, causing a decrease in overall energy efficiency. The highest energy efficiency of 89 ±3 % was achieved using 2.5 mol dm-3 FeCl2 solution at 70 °C and a current density of 0.1 kA m-2. In terms of the energy input per Fe mass, this means 1.88 Wh g-1. The limiting energy input per mass of the Fe-deposit, calculated by extrapolating experimental results toward Eocell potential, was found to be 1.76 Wh g-1. For optimal long-duration electrolysis efficiency and performance, the optimal catholyte concentration range is 1-2 mol dm-3 FeCl2. We performed in situ X-ray absorption spectroscopy experimental studies to validate theoretical conclusions from literature related to the population and structure of Fe-species in the FeCl2 (aq) solution at different concentrations (1 - 4 mol dm-3) and temperatures (25 - 80 °C). This revealed that at low temperature and low FeCl2 concentration, the octahedral first coordination sphere around Fe is occupied by one Cl ion at a distance of 2.33 (±0.02) Å and five H2O at a distance of 2.095 (±0.005) Å. The structure of the ionic complex gradually changes with an increase in temperature and/or concentration. The apical H2O is substituted by a Cl ion to yield a neutral Fe[Cl2(H2O)4]0. The transition from the charged Fe[Cl(H2O)5]+ to the neutral Fe[Cl2(H2O)4]0 causes a significant drop in the solution conductivity, which well correlates with the existing state-of-the-art conductivity models. An additional steric impediment of the electrolytic cell is caused by the predominant neutral species present in the catholyte solution at high concentration. This correlates with poor electrolysis performance at a very high catholyte concentration (4 mol dm-3 FeCl2), especially at high current densities (> 1 kA m-2). The neutral Fe[Cl2(H2O)4]0 complex negatively affects the anion exchange membrane ion (Cl-) transfer and lowers the concentration of electroactive species (Fe[Cl(H2O)5]+) at the cathode surface. The kinetics of hydrogen evolution from the reaction between Fe powder and HCl acid was studied under the first-order reaction condition. The activation energy was determined to be 55.3 kJ mol-1.
Ključne besede: ICEC, Power-to-Solid, energy storage, hydrogen, ferrous chloride, electrolysis, Fe deposition, efficiency, XAS, structure and population, ionic species, ion association, conductivity
Objavljeno v RUNG: 18.04.2023; Ogledov: 3248; Prenosov: 50  (1 glas)
Celotno besedilo (4,34 MB)

Opis: Electrocatalytic water splitting is one of the cleanest and sustainable way to generate hydrogen. Transition metal based electrocatalysts like iron phosphides (Fe2P, FeP), molybdenum diselenides (MoSe2), and tungsten carbides (W2C, WC) have unique advantages including competitive cost compared to platinum, controllable active sites, and electronic structures that could significantly enhance the hydrogen evolution reaction (HER). Here, we present a combination of approaches for preparing catalyst materials. As an elegant technique, colloidal synthesis was used to synthesize Mo and W nanoparticles. Combined with selenization and carbidation approaches at elevated temperature, it allowed to synthesize MoSe2, W2C, and WC thin films. The syntheses of Fe2P and FeP catalyst were achieved in one-stage using triphenylphosphine precursor. The obtained catalysts were applied in electrocatalytic HER studies.
Ključne besede: iron phosphides molybdenum diselenide tungtsen carbides electrocatalysis hydrogen evolution
Objavljeno v RUNG: 06.02.2023; Ogledov: 2761; Prenosov: 0
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