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12. X-ray spectrometry in plant biologyKatarina Vogel-Mikuš, Iztok Arčon, Alojz Kodre, Anja Kavčič, Peter Kump, Primož Pelicon, 2018, objavljeni povzetek znanstvenega prispevka na konferenci (vabljeno predavanje) Opis: Trace elements are essential components of living systems, but at the same time they can be toxic at concentrations beyond those necessary for their biological functions. In addition, the toxicity can be extended to other non-essential elements of very similar atomic characteristics that can mimic the properties of a trace element.
Trace element malnutrition affects more than half of the world’s population, while on the other hand industrialization, traffic and extensive use of fertilizers have resulted in exceedingly high concentrations of non-essential elements in food crops, posing risks to human health.
In order to be able to develop and improve phyto-technologies that enable production of safe and quality food, knowledge on the basic mechanisms involved in trace and non-essential element uptake, transport, accumulation and ligand environment in plants is needed.
Such studies are nowadays supported by highly sophisticated X-ray based techniques, such as synchrotron based X-ray fluorescence spectrometry, proton induced X-ray emission and X-ray absorption spectroscopy, enabling imaging of element distribution and determination of speciation and ligand environment of trace elements in biological tissues and cells with high spatial resolution and sensitivity.
Selected case studies of metal distribution and speciation in selected model and crop plants, achieved by interdisciplinary work, will be presented.
Ključne besede: X-ray spectrometry, plants, XANES, EXAFS
Objavljeno v RUNG: 12.09.2018; Ogledov: 4406; Prenosov: 0
Gradivo ima več datotek! Več... |
13. Edge profiles in K shell photoabsorption spectra of gaseous hydrides of 3p elements and homologuesRobert Hauko, Jana Padežnik Gomilšek, Alojz Kodre, Iztok Arčon, Giuliana Aquilanti, izvirni znanstveni članek Opis: Photoabsorption spectra of gaseous hydrides of 3p elements (PH3, H2S, HCl) are measured in the energy region of
photoexcitations pertaining to K edge. The analysis of the edge profile is extended to hydrides of 4p series (GeH4,
AsH3, H2Se, HBr) from an earlier experiment, and to published spectra of 2p hydrides (CH4, NH3, H2O, HF) and
noble gases Ar, Kr and Ne and SiH4. The edge profiles are modelled with a linear combination of lorentzian
components, describing excitations to individual bound states and to continuum. Transition energies and
probabilities are also calculated in the non-relativistic molecular model of the ORCA code, in good agreement
with the experiment. Edge profiles in the heavier homologues are closely similar, the symmetry of the molecule
governs the transitions to the lowest unoccupied orbitals. In 2p series the effect of the strong nuclear potential
prevails. Transitions to higher, atomic-like levels remain very much the same as in free atoms.
Ključne besede: X-ray absorption spectra, gaseous hydrides, 3p K-edge spectra, DFT
Objavljeno v RUNG: 23.08.2017; Ogledov: 4534; Prenosov: 0
Gradivo ima več datotek! Več... |
14. An extracellular polymeric substance quickly chelates mercury(II) with N-heterocyclic groupsFranco Baldi, Michele Gallo, Salvatore Daniale, Dario Battistel, Claudia Faleri, Alojz Kodre, Iztok Arčon, 2017, izvirni znanstveni članek Opis: A strain of Klebsiella oxytoca DSM 29614 is grown on sodium citrate in the presence of 50 mg l−1 of Hg as Hg(NO3)2. During growth, the strain produces an extracellular polymeric substance (EPS), constituted by a mixture of proteins and a specific exopolysaccharide. The protein components, derived from the outer membrane of cells, are co-extracted with the extracellular exopolysaccharide using ethanol. The extracted EPS contains 7.5% of Hg (total amount). This indicates that EPS is an excellent material for the biosorption of Hg2+, through chemical complexation with the EPS components. The binding capacity of these species towards Hg2+ is studied by cyclic voltammetry, and Hg L3-edge XANES and EXAFS spectroscopy. The results found indicate that Hg2+ is mainly bound to the nitrogen of the imidazole ring or other N-heterocycle compounds. The hydroxyl moities of sugars and/or the carboxyl groups of two glucuronic acids in the polysaccharide can also play an important role in sequestring Hg2+ ions. However, N-heterocyclic groups of proteins bind Hg2+ faster than hydroxyl and carboxyl groups of the polysaccharide.
Ključne besede: Klebsiella oxytoca, Biosorption, Proteins, Polysaccharide, Cyclic voltammetry, EXAFS analysis
Objavljeno v RUNG: 03.03.2017; Ogledov: 5823; Prenosov: 0
Gradivo ima več datotek! Več... |
15. Donor doping of K0.5Na0.5NbO3 ceramics with strontium and its implications to grain size, phase composition and crystal structureJitka Hreščak, Goran Dražić, Marco Deluca, Iztok Arčon, Alojz Kodre, M. Dapiaggi, Tadej Rojac, Barbara Malič, Andreja Benčan, 2017, izvirni znanstveni članek Opis: In this study, the particular effects of A-site donor doping in a lead-free piezoceramic material K0.5Na0.5NbO3 (KNN) doped with Sr2+, i.e., the crystal-structure change, the secondary-phase formation and the grain-size decrease, were investigated. The already-reported causes of these effects upon doping KNN were critically discussed and a mechanism of the effects’ formation was suggested and experimentally supported with advanced analytical methods. Extended X-ray absorption fine structure (EXAFS) analyses proved that the Sr occupies the perovskite A-sublattice, and locally modifies the KNN monoclinic structure to cubic. With the help of Sr K-edge EXAFS and wavelength-dispersive X-ray spectroscopy, the Sr was found to be homogenously distributed in the KNN perovskite lattice with 0.5, 1 and 2% Sr and no Sr segregation on the nano level was found in any of the studied samples with transmission electron microscopy. Introducing Sr into the A-sublattice, as well as accounting for the charge-compensating A-site vacancies in the starting composition, causes increasing lattice disorder and microstrain, as determined from a Rietveld refinement of the synchrotron X-ray diffraction data. Above 2% Sr the system segregates the A-site vacancies in a secondary phase in order to release the chemical pressure, as revealed by Raman spectroscopy. All these effects result in an increasing number of low-angle grain boundaries that limit the grain growth and finally lead to a significant grain-size decrease.
Ključne besede: perovskite, potassium sodium niobate, donor doping, cation vacancies
Objavljeno v RUNG: 17.01.2017; Ogledov: 5887; Prenosov: 329
 Celotno besedilo (2,11 MB) |
16. Arbuscular mycorrhizal fungi alter Hg root uptake and ligand environment as studied by X-ray absorption fine structureAlojz Kodre, Iztok Arčon, Marta Debeljak, Mateja Potisek, Matevž Likar, Katarina Vogel-Mikuš, 2017, izvirni znanstveni članek Opis: Mercury (Hg) – plant – fungal interactions are only poorly studied. Hg speciation and ligand environment
in maize roots inoculated with arbuscular mycorrhizal (AM) fungi were investigated in order to better
understand the role of AM in Hg soil to root transfer.
The maize plants were grown in Hg polluted substrate (50 mg g1 as dissolved HgCl2) and inoculated
with AM fungi originating from: a) highly Hg polluted environment of a former Hg smelting site in Idrija,
Slovenia, (Glomus sp. – sample AmI), and b) non-polluted environment (commercial AM inoculum
Symbivit1 – sample AmC). Hg speciation and ligand environment in maize roots was studied by Hg-L3
XANES and EXAFS with emphasis on XAS methodology – modelling and fitting the XAFS spectra to extract in a reliable way as much information on Hg coordination as possible. The AmI plants developed more arbuscules and less vesicles than the AmC plants, and also
accumulated more Hg in the roots. A clear difference in Hg coordination between the AM (AmC & AmI)
and the control (ConC & ConI) plants is recognized in Hg L3-edge EXAFS analysis: in the ConC & ConI
maize roots 73–80% of Hg is attached between two sulphur atoms at the distance of 2.34 Å. The remaining
ligand is nitrogen at 2.04 Å. In AmI & AmC roots another Hg-S attachment encompassing four thiol groups
at the S-distance of 2.50 Å are identified, accounting for 21–26%. AM fungi can modify Hg ligand environment in plant roots, thus playing an important role in biogeochemical cycling of Hg in terrestrial
ecosystems.
Ključne besede: EXAFS
XANES
Arbuscular mycorrhiza
Phytoremediation
Toxicity
Hg coordination
Ligand environment
Objavljeno v RUNG: 27.09.2016; Ogledov: 7486; Prenosov: 0
Gradivo ima več datotek! Več... |
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19. High-resolution X-ray absorption spectrometry of atomic vaporsIztok Arčon, Jana Padežnik Gomilšek, Alojz Kodre, Andrej Mihelič, 2004, izvirni znanstveni članek Opis: A measurement of an x-ray absorption spectrum of a monatomic sample yields pure atomic absorption essential for the EXAFS (Extended X-ray Absorption FineStructure) analysis in cases of a weak structural signal. A construction of an absorption cell to contain vapor sample takes into account specific properties of the investigated element. Metal-vapor absorption cells for the elements K, zn, Rb, Cd, Cs, and Hg are presented and comments are made on the use of materials and the operating mechanisms of the cells.
Ključne besede: X-žarki, absorpcija, EXAFS, absorpcijske celice
Objavljeno v RUNG: 10.07.2015; Ogledov: 5809; Prenosov: 28
 Povezava na celotno besedilo |
20. X-ray absorption spectroscopy and related techniquesIztok Arčon, Alojz Kodre, Jana Padežnik Gomilšek, 2004, izvirni znanstveni članek Opis: In the extensive field of X-ray diagnostic techniques, nowadays mostly implemented on synchrotron X-ray sources, the X-ray absorption methods offer a relatively simple tool for structural analysis of materials. The advantage of the methods is the sensitivity to chemical species and the insensitivity to the long-range order. An overview of various detection techniques is given together with the discussion of accuracy of the method with regard to the spatial resolution and the possible contamination by intra-atomic contributions, the multielectron photoexcitations.
Ključne besede: X-žarki, absorpcija, EXAFS, XANES
Objavljeno v RUNG: 10.07.2015; Ogledov: 5501; Prenosov: 27
Povezava na celotno besedilo |
