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37. Nitrate as a probe of cytochrome c surface : crystallographic identification of crucial "hot spots" for protein-protein recognitionMatteo De March, Nicola Demitri, Rita De Zorzi, Angela Casini, Chiara Gabbiani, Annalisa Guerri, Luigi Messori, Silvano Geremia, 2014, original scientific article Keywords: cytochrome c, electron transfer complexes, electrostatic surface, redox protein
Published in RUNG: 03.03.2021; Views: 2244; Downloads: 0
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39. The finite size effects and two-state paradigm of protein foldingArtem Badasyan, Matjaž Valant, Jože Grdadolnik, Vladimir N. Uversky, 2021, original scientific article Abstract: The coil to globule transition of the polypeptide chain is the physical phenomenon behind the folding of globular proteins. Globular proteins with a single domain usually consist of about 30 to 100 amino acid residues, and this finite size extends the transition interval of the coil-globule phase transition. Based on the pedantic derivation of the two-state model, we introduce the number of amino acid residues of a polypeptide chain as a parameter in the expressions for two cooperativity measures and reveal their physical significance. We conclude that the k2 measure, defined as the ratio of van ’t Hoff and calorimetric enthalpy is related to the degeneracy of the denatured state and describes the number of cooperative units involved in the transition; additionally, it is found that the widely discussed k2=1 is just the necessary condition to classify the protein as the two-state folder. We also find that Ωc, a quantity not limited from above and growing with system size, is simply proportional to the square of the transition interval. This fact allows us to perform the classical size scaling analysis of the coil-globule phase transition. Moreover, these two measures are shown to describe different characteristics of protein folding
Keywords: protein folding, two-state model, size scaling, thermodynamic cooperativity
Published in RUNG: 24.02.2021; Views: 2193; Downloads: 66
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